me ----------------------------- 369

on and regression tree

m ----------------------------- 142

on function ------------------- 80

on margin ------------------- 132

--------------------------------- 78

------------------------------- 126

------------------------------- 339

ysis ----------------------- 15, 37

tre ------------------------------ 47

--------------------------------- 65

o acids ------------------------- 40

interaction -------------------- 1

bands ----------------------- 175

matrix -------------------------- 98

nverse gamma ------------- 304

d regression ----------------- 184

------------------------------- 271

coefficient ------------------- 38

n ----------------------------- 349

matrix ------------------- 61, 85

perator ---------------------- 371

ation ------------------------- 107

--------------------------------- 44

ignment ------------------------ 7

atrix ------------------------- 125

--------------------------------- 65

ee ----------------------------- 142

ng ---------------------------- 139

l network ------------------- 139

------------------------------- 195

------------------------------- 315

ssion ------------------------- 292

--------------------------------- 15

--------------------------------- 27

mation ------------ 14, 368, 388

ed clustering ----------------- 65

variable --------------------- 165

function --------------------- 117

------------------------------- 262

deterministic conceptual thinking ------- 1

dgamma ------------------------------------ 24

diagonal move --------------------------- 320

differentially expressed gene - 2, 162, 195

differentially methylated site --- 162, 195,

196

discriminant analysis --------------------- 79

discrimination boundary ----------------- 93

discrimination power --------------------- 85

discrimination ratio ----------------------- 85

dist ------------------------------------------ 42

distal effect model ------------------------ 15

divide and conquer --------------------- 142

DMS -------------------------------------- 196

DNA methylation ----------------------- 161

DNAStringSet --------------------------- 341

DNN -------------------------------------- 139

dnorm --------------------------------------- 23

DOG -------------------------------------- 273

down-regulated DEG------------------- 247

down-regulated gene ------------------- 247

DSG --------------------------------------- 302

DT ----------------------------------------- 145

dual-chromosome crossover ---------- 379

dual-scale Gaussian--------------------- 302

dynamic programming table ---------- 317

e1071 -------------------------------- 95, 134

eBayes ------------------------------------ 252

edgeR ------------------------------------- 265

edit distance ------------------------------ 317

elastic net linear regression ------------ 190

elliptic -------------------------------------- 61

elmNN ------------------------------------ 120

entropy ----------------------------------- 146

enzyme ------------------------------------- 78

essential gene ---------------------------2, 13

ESSENTIALS ----------------------------- 15

Euclidean distance ------------------------ 38

evolutionary algorithms ---------------- 366

evolutionary computation ------------- 366